Bioinformatics

Mesenchymal thymic niche cells enable regeneration of the adult thymus and T cell immunity

Mesenchymal thymic niche cells enable regeneration of the adult thymus and T cell immunity

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Palmer, S., Albergante, L., Blackburn, C. C. & Newman, T. J. Thymic involution and rising disease incidence with age. Proc. ...

High-plex spatial RNA imaging in one round with conventional microscopes using color-intensity barcodes

High-plex spatial RNA imaging in one round with conventional microscopes using color-intensity barcodes

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Ståhl, P. L. et al. Visualization and analysis of gene expression in tissue sections by spatial transcriptomics. Science 353, 78–82 ...

A single-chain derivative of an integrin-activating antibody potentiates organoid growth in Matrigel and collagen hydrogels

A single-chain derivative of an integrin-activating antibody potentiates organoid growth in Matrigel and collagen hydrogels

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Immunofluorescence analysis of apical–basal polarity and proliferation marker Ki67 P26N human colon organoids were grown for 2 days in BME ± ...

Selective RNA sequestration in biomolecular condensates directs cell fate transitions

Selective RNA sequestration in biomolecular condensates directs cell fate transitions

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P-body purification To profile P-body contents, we adapted a fluorescence-activated sorting method29,42 using a green fluorescent protein (GFP)-LSM14A expression construct ...

Elucidating lipid nanoparticle properties and structure through biophysical analyses

Elucidating lipid nanoparticle properties and structure through biophysical analyses

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Pardi, N., Hogan, M. J., Porter, F. W. & Weissman, D. mRNA vaccines—a new era in vaccinology. Nat. Rev. Drug ...

Discovery and engineering of retrons for precise genome editing

Discovery and engineering of retrons for precise genome editing

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Fichter, K. M., Setayesh, T. & Malik, P. Strategies for precise gene edits in mammalian cells. Mol. Ther. Nucleic Acids ...

Democratizing protein language model training, sharing and collaboration

Democratizing protein language model training, sharing and collaboration

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Drews, J. Drug discovery: a historical perspective. Science 287, 1960–1964 (2000). Article  PubMed  CAS  Google Scholar  Jacob, François & Monod, ...

Deep-learning-based virtual screening of antibacterial compounds

Deep-learning-based virtual screening of antibacterial compounds

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Mayr, L. M. & Bojanic, D. Novel trends in high-throughput screening. Curr. Opin. Pharmacol. 9, 580–588 (2009). Article  CAS  PubMed  ...

Live imaging of late-stage preimplantation human embryos reveals de novo mitotic errors

Live imaging of late-stage preimplantation human embryos reveals de novo mitotic errors

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Magli, M. C. et al. Chromosome mosaicism in day 3 aneuploid embryos that develop to morphologically normal blastocysts in vitro. ...

AlphaDIA enables DIA transfer learning for feature-free proteomics

AlphaDIA enables DIA transfer learning for feature-free proteomics

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Calibration and optimization of retention time, ion mobility and m/z During search, AlphaDIA calibrates library properties such as retention time, ...